Publications (* corresponding author)
For more resources for publications, please visit Hongan Long's ResearchGate
Long, Hongan; Miller, Samuel F; Strauss, Chloe; Zhao, Chaoxian; Cheng, Lei; Ye, Zhiqiang; Griffin, Katherine; Te, Ronald; Lee, Heewook; Chen, Chi-Chun; Lynch, Michael. 2016. Antibiotic treatment enhances the genome-wide mutation rate of target cells. Proceedings of the National Academy of Sciences U.S.A. 113(18):E2498-E2505 pdf
Kucukyildirim, Sibel; Long, Hongan; Sung, Way; Miller, Samuel F; Doak, Thomas G; Lynch, Michael. 2016. The rate and spectrum of spontaneous mutations in Mycobacterium smegmatis, a bacterium naturally devoid of the postreplicative mismatch repair pathway. G3: Genes| Genomes| Genetics 6(7):2157-2163 (co-first author) pdf
Lynch, Michael; Ackerman, Matthew S; Gout, Jean-Francois; Long, Hongan; Sung, Way; Thomas, W Kelley; Foster, Patricia L. 2016. Genetic drift, selection and the evolution of the mutation rate. Nature Reviews Genetics 17(11):704-714 pdf
Long, Hongan; Winter, David J; Chang, Allan Y-C; Sung, Way; Wu, Steven H; Balboa, Mariel; Azevedo, Ricardo BR; Cartwright, Reed A; Lynch, Michael; Zufall, Rebecca A. 2016. Low base-substitution mutation rate in the germline genome of the ciliate Tetrahymena thermophila. Genome Biology and Evolution 8 (12): 3629-3639 (co-first author) pdf
Long*, Hongan; Behringer, Megan G; Williams, Emily; Te, Ronald; Lynch, Michael. 2016. Similar mutation rates but highly diverse mutation spectra in Ascomycete and Basidiomycete yeasts. Genome Biology and Evolution 8(12):3815-3821 pdf
Long*, Hongan; Zufall, Rebecca A. 2015. Mutational robustness of morphological traits in the ciliate Tetrahymena thermophila. Journal of Eukaryotic Microbiology 62(2):249-254 pdf
Long*, Hongan; Kucukyildirim, Sibel; Sung, Way; Williams, Emily; Lee, Heewook; Ackerman, Matthew; Doak, Thomas G; Tang, Haixu; Lynch, Michael. 2015. Background mutational features of the radiation-resistant bacterium Deinococcus radiodurans. Molecular Biology and Evolution 32(9):2383-2392 pdf
Long*, Hongan; Sung, Way; Miller, Samuel F; Ackerman, Matthew S; Doak, Thomas G; Lynch, Michael. 2015. Mutation rate, spectrum, topology, and context-dependency in the DNA mismatch repair-deficient Pseudomonas fluorescens ATCC948. Genome Biology and Evolution 7(1):262-271 pdf
Xu, Sen; Ackerman, Matthew S; Long, Hongan; Bright, Lydia; Spitze, Ken; Ramsdell, Jordan S; Thomas, W Kelley; Lynch, Michael. 2015. A male-specific genetic map of the microcrustacean Daphnia pulex based on single-sperm whole-genome sequencing. Genetics. 201(1):31-38 pdf
Farlow, Ashley; Long, Hongan; Arnoux, Stéphanie; Sung, Way; Doak, Thomas G; Nordborg, Magnus; Lynch, Michael. 2015. The spontaneous mutation rate in the fission yeast Schizosaccharomyces pombe. Genetics 201(2):737-744 (co-first author) pdf
Long*, Hong-An; Paixão, Tiago; Azevedo, Ricardo BR; Zufall, Rebecca A. 2013. Accumulation of spontaneous mutations in the ciliate Tetrahymena thermophila. Genetics 195(2):527-540 pdf
Long*, Hongan; Zufall, Rebecca A. 2010. Diverse modes of reproduction in the marine free-living ciliate Glauconema trihymene. BMC Microbiology 10(1):108 pdf
Long, Hongan; Song, Weibo; Al-Rasheid, Khaled A; Gong, Jun. 2009. Three marine haptorid ciliates from northern China: Paraspathidium apofuscum n. sp., Trachelotractus entzi (Kahl, 1927) Foissner, 1997 and Apotrachelotractus variabialis Long, Song and Warren, 2009 (Protozoa, Ciliophora). Journal of Natural History 43(29-30):1749-1761 pdf
Long, Hongan; Liu, Hongbin; Liu, Weiwei; Miao, Miao; Hu, Xiaozhong; Lin, Xiaofeng; Song, Weibo. 2008. Two new ciliates from Hong Kong coastal water: Orthodonella sinica n. sp. and Apokeronopsis wrighti n. sp. (Protozoa: Ciliophora) Journal of Eukaryotic Microbiology 55(4):321-330 pdf
Long, Hongan; Song, Weibo; AL-Rasheid, Kahled AS; Wang, Yangang; Yi, Zhenzhen; Al-Quraishy, Saleh A; Lin, Xiaofeng; Al-Farraj, Saleh A. 2008. Taxonomic studies on three marine species of Frontonia from northern China: F. didieri n. sp., F. multinucleata n. sp. and F. tchibisovae Burkovsky, 1970 (Ciliophora: Peniculida). Zootaxa. 1687:35-50 pdf
Long, Hongan; Song, Weibo; Warren, A; Al-Rasheid, K; Gong, J; Chen, X. 2007. Two new ciliates from the north China seas: Schizocalyptra aeschtae nov. spec. and Sathrophilus holtae nov. spec., with New Definition of the Genus Sathrophilus (Ciliophora, Oligohymenophora). Acta Protozoologica 46:229-245 pdf
Long, Hongan; Song, Weibo; Wang, Yangang; Li, Jiqiu. 2007. Morphological redescription of two endocommensal ciliates, Entorhipidium fukuii Uyemura, 1934 and Madsenia indomita (Madsen, 1931) Kahl, 1934 from digestive tracts of sea urchins of the Yellow Sea, China (Ciliophora; Scuticociliatida). European Journal of Protistology 43(2):101-114 pdf
Long, Hongan; Song, Weibo; Chen, Jiaxin; Gong, Jun; Ji, Daode; Hu, Xiaozhong; Ma, Honggang; Zhu, Mingzhuang; Wang, Mei. 2006. Studies on an endoparasitic ciliate Boveria labialis (Protozoa: Ciliophora) from the sea cucumber, Apostichopus japonicus. Journal of the Marine Biological Association of the United Kingdom 86(4):823-828 pdf
Long, Hongan; Song, Weibo; Gong, Jun; Hu, Xiaozhong; Ma, Honggang; Wang, Mei. 2005. Frontonia lynni n. sp., a new marine ciliate (Protozoa, Ciliophora, Hymenostomatida) from Qingdao, China. Zootaxa 1003:57-64 pdf
Long, Hongan; Miller, Samuel F; Strauss, Chloe; Zhao, Chaoxian; Cheng, Lei; Ye, Zhiqiang; Griffin, Katherine; Te, Ronald; Lee, Heewook; Chen, Chi-Chun; Lynch, Michael. 2016. Antibiotic treatment enhances the genome-wide mutation rate of target cells. Proceedings of the National Academy of Sciences U.S.A. 113(18):E2498-E2505 pdf
Kucukyildirim, Sibel; Long, Hongan; Sung, Way; Miller, Samuel F; Doak, Thomas G; Lynch, Michael. 2016. The rate and spectrum of spontaneous mutations in Mycobacterium smegmatis, a bacterium naturally devoid of the postreplicative mismatch repair pathway. G3: Genes| Genomes| Genetics 6(7):2157-2163 (co-first author) pdf
Lynch, Michael; Ackerman, Matthew S; Gout, Jean-Francois; Long, Hongan; Sung, Way; Thomas, W Kelley; Foster, Patricia L. 2016. Genetic drift, selection and the evolution of the mutation rate. Nature Reviews Genetics 17(11):704-714 pdf
Long, Hongan; Winter, David J; Chang, Allan Y-C; Sung, Way; Wu, Steven H; Balboa, Mariel; Azevedo, Ricardo BR; Cartwright, Reed A; Lynch, Michael; Zufall, Rebecca A. 2016. Low base-substitution mutation rate in the germline genome of the ciliate Tetrahymena thermophila. Genome Biology and Evolution 8 (12): 3629-3639 (co-first author) pdf
Long*, Hongan; Behringer, Megan G; Williams, Emily; Te, Ronald; Lynch, Michael. 2016. Similar mutation rates but highly diverse mutation spectra in Ascomycete and Basidiomycete yeasts. Genome Biology and Evolution 8(12):3815-3821 pdf
Long*, Hongan; Zufall, Rebecca A. 2015. Mutational robustness of morphological traits in the ciliate Tetrahymena thermophila. Journal of Eukaryotic Microbiology 62(2):249-254 pdf
Long*, Hongan; Kucukyildirim, Sibel; Sung, Way; Williams, Emily; Lee, Heewook; Ackerman, Matthew; Doak, Thomas G; Tang, Haixu; Lynch, Michael. 2015. Background mutational features of the radiation-resistant bacterium Deinococcus radiodurans. Molecular Biology and Evolution 32(9):2383-2392 pdf
Long*, Hongan; Sung, Way; Miller, Samuel F; Ackerman, Matthew S; Doak, Thomas G; Lynch, Michael. 2015. Mutation rate, spectrum, topology, and context-dependency in the DNA mismatch repair-deficient Pseudomonas fluorescens ATCC948. Genome Biology and Evolution 7(1):262-271 pdf
Xu, Sen; Ackerman, Matthew S; Long, Hongan; Bright, Lydia; Spitze, Ken; Ramsdell, Jordan S; Thomas, W Kelley; Lynch, Michael. 2015. A male-specific genetic map of the microcrustacean Daphnia pulex based on single-sperm whole-genome sequencing. Genetics. 201(1):31-38 pdf
Farlow, Ashley; Long, Hongan; Arnoux, Stéphanie; Sung, Way; Doak, Thomas G; Nordborg, Magnus; Lynch, Michael. 2015. The spontaneous mutation rate in the fission yeast Schizosaccharomyces pombe. Genetics 201(2):737-744 (co-first author) pdf
Long*, Hong-An; Paixão, Tiago; Azevedo, Ricardo BR; Zufall, Rebecca A. 2013. Accumulation of spontaneous mutations in the ciliate Tetrahymena thermophila. Genetics 195(2):527-540 pdf
Long*, Hongan; Zufall, Rebecca A. 2010. Diverse modes of reproduction in the marine free-living ciliate Glauconema trihymene. BMC Microbiology 10(1):108 pdf
Long, Hongan; Song, Weibo; Al-Rasheid, Khaled A; Gong, Jun. 2009. Three marine haptorid ciliates from northern China: Paraspathidium apofuscum n. sp., Trachelotractus entzi (Kahl, 1927) Foissner, 1997 and Apotrachelotractus variabialis Long, Song and Warren, 2009 (Protozoa, Ciliophora). Journal of Natural History 43(29-30):1749-1761 pdf
Long, Hongan; Liu, Hongbin; Liu, Weiwei; Miao, Miao; Hu, Xiaozhong; Lin, Xiaofeng; Song, Weibo. 2008. Two new ciliates from Hong Kong coastal water: Orthodonella sinica n. sp. and Apokeronopsis wrighti n. sp. (Protozoa: Ciliophora) Journal of Eukaryotic Microbiology 55(4):321-330 pdf
Long, Hongan; Song, Weibo; AL-Rasheid, Kahled AS; Wang, Yangang; Yi, Zhenzhen; Al-Quraishy, Saleh A; Lin, Xiaofeng; Al-Farraj, Saleh A. 2008. Taxonomic studies on three marine species of Frontonia from northern China: F. didieri n. sp., F. multinucleata n. sp. and F. tchibisovae Burkovsky, 1970 (Ciliophora: Peniculida). Zootaxa. 1687:35-50 pdf
Long, Hongan; Song, Weibo; Warren, A; Al-Rasheid, K; Gong, J; Chen, X. 2007. Two new ciliates from the north China seas: Schizocalyptra aeschtae nov. spec. and Sathrophilus holtae nov. spec., with New Definition of the Genus Sathrophilus (Ciliophora, Oligohymenophora). Acta Protozoologica 46:229-245 pdf
Long, Hongan; Song, Weibo; Wang, Yangang; Li, Jiqiu. 2007. Morphological redescription of two endocommensal ciliates, Entorhipidium fukuii Uyemura, 1934 and Madsenia indomita (Madsen, 1931) Kahl, 1934 from digestive tracts of sea urchins of the Yellow Sea, China (Ciliophora; Scuticociliatida). European Journal of Protistology 43(2):101-114 pdf
Long, Hongan; Song, Weibo; Chen, Jiaxin; Gong, Jun; Ji, Daode; Hu, Xiaozhong; Ma, Honggang; Zhu, Mingzhuang; Wang, Mei. 2006. Studies on an endoparasitic ciliate Boveria labialis (Protozoa: Ciliophora) from the sea cucumber, Apostichopus japonicus. Journal of the Marine Biological Association of the United Kingdom 86(4):823-828 pdf
Long, Hongan; Song, Weibo; Gong, Jun; Hu, Xiaozhong; Ma, Honggang; Wang, Mei. 2005. Frontonia lynni n. sp., a new marine ciliate (Protozoa, Ciliophora, Hymenostomatida) from Qingdao, China. Zootaxa 1003:57-64 pdf
